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Data mining and software development for RNA-seq-based ...

In this thesis, three different aspects of RNA biology are investigated, all of which depend on the interplay between RNA and proteins.



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Epigenetic dosage identifies two major and functionally distinct &beta
Data normalization is critical to the process of estimating RNA degradation by analyzing RNA levels when transcription is blocked.
Calculating RNA degradation rates using large-scale normalization ...
To examine the effects of B. breve UCC2003 on the transcriptional profiles of host IECs under homeostatic conditions, we extracted RNA from 
Bifidobacterium breve UCC2003 Induces a Distinct ... - mediaTUM
Here, we use comparative analyses of RNA-seq data sets generated from human, porcine, equine, and bovine peripheral blood to systematically 
RNA Sequencing (RNA-Seq) Reveals Extremely Low ... - Frontiers
In this study, we have tested three different extraction methods: bead-based, solid- phase and salting-out, and evaluated their impact on STEC 
Evaluation of high molecular weight DNA extraction methods for ...
Results. 3?8. Assessing the impact of amplification noise in RNA-seq. 3?8. The impact of amplification on differential expression analyses by RNA-seq.
Optimising gene expression profiling using RNA-seq
For bacterial infec- tion, an overnight culture of the transposon library (incubated at. 37°C at 250 rpm in BHI) was adjusted to an OD600 of 
Listeria monocytogenes genes supporting growth under standard ...
BHI brain-heart-infusion bp base pair. C cytosine. Cat RNA regulators, and can themselves also directly influence mRNA stability or translation.
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Lexique-grammaire et Unitex: quels apports pour une description ...
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